Currently browsing: Items authored or edited by Wendi Bacon https://orcid.org/0000-0002-8170-8806

Bacon, Wendi; Holinski, Alexandra; Pujol, Marina; Wilmott, Meredith and Morgan, Sarah L (2022). Ten simple rules for leveraging virtual interaction to build higher-level learning into bioinformatics short courses. PLOS Computational Biology, 18(7), article no. e1010220.

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Bacon, Wendi and The Galaxy Community (2022). The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. Nucleic Acids Research, 50(W1) W345-W351.

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Bacon, Wendi A.; Hamilton, Russell S.; Yu, Ziyi; Kieckbusch, Jens; Hawkes, Delia; Krzak, Ada M.; Abell, Chris; Colucci, Francesco and Charnock-Jones, D. Stephen (2018). Single-Cell Analysis Identifies Thymic Maturation Delay in Growth-Restricted Neonatal Mice. Frontiers in Immunology, 9, article no. 2523.

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Barrett, Neil A.; Malouf, Camille; Kapeni, Chrysa; Bacon, Wendi A.; Giotopoulos, George; Jacobsen, Sten Eirik W.; Huntly, Brian J. and Ottersbach, Katrin (2016). Mll-AF4 Confers Enhanced Self-Renewal and Lymphoid Potential during a Restricted Window in Development. Cell Reports, 16(4) pp. 1039–1054.

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Hiltemann, Saskia; Rasche, Helena; Gladman, Simon; Hotz, Hans-Rudolf; Larivière, Delphine; Blankenberg, Daniel; Jagtap, Pratik D.; Wollmann, Thomas; Bretaudeau, Anthony; Goué, Nadia; Griffin, Timothy J.; Royaux, Coline; Le Bras, Yvan; Mehta, Subina; Syme, Anna; Coppens, Frederik; Droesbeke, Bert; Soranzo, Nicola; Bacon, Wendi; Psomopoulos, Fotis; Gallardo-Alba, Cristóbal; Davis, John; Föll, Melanie Christine; Fahrner, Matthias; Doyle, Maria A.; Serrano-Solano, Beatriz; Fouilloux, Anne Claire; van Heusden, Peter; Maier, Wolfgang; Clements, Davx; Heyl, Florian; Grüning, Björn and Batut, Bérénice (2023). Galaxy Training: A powerful framework for teaching! PLOS Computational Biology, 19(1), article no. e1010752.

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Huang, Li-Wen; Bacon, Wendi; Cirrincione, Constance; Peterson, Bercedis; Long, Gwynn; Rizzieri, David; Sullivan, Keith M.; Corbet, Kelly; Horwitz, Mitchell; Chao, Nelson; Gasparetto, Cristina and Tuchman, Sascha A. (2017). Efficacy and safety of high-dose chemotherapy with autologous stem cell transplantation in senior versus younger adults with newly diagnosed multiple myeloma. Hematological Oncology, 35(4) pp. 752–759.

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Moreno, Pablo; Huang, Ni; Manning, Jonathan R.; Mohammed, Suhaib; Solovyev, Andrey; Polanski, Krzysztof; Bacon, Wendi; Chazarra, Ruben; Talavera-López, Carlos; Doyle, Maria A.; Marnier, Guilhem; Grüning, Björn; Rasche, Helena; George, Nancy; Fexova, Silvie Korena; Alibi, Mohamed; Miao, Zhichao; Perez-Riverol, Yasset; Haeussler, Maximilian; Brazma, Alvis; Teichmann, Sarah; Meyer, Kerstin B. and Papatheodorou, Irene (2021). User-friendly, scalable tools and workflows for single-cell RNA-seq analysis. Nature Methods, 18(4) pp. 327–328.

Mascarenhas, Maria I.; Bacon, Wendi A.; Kapeni, Chrysa; Fitch, Simon R.; Kimber, Gillian; Cheng, S. W. Priscilla; Li, Juan; Green, Anthony R. and Ottersbach, Katrin (2016). Analysis of Jak2 signaling reveals resistance of mouse embryonic hematopoietic stem cells to myeloproliferative disease mutation. Blood, 127(19) pp. 2298–2309.

Olson, Isabel A.; Bacon, Wendi A.; Baez Sosa, Yessica Y.; Delaney, Katherine M.; Forte, Salvador A.; Guglielmo, Michael A.; Hill, Alexa N.; Kiesow, Katrina H.; Langenbacher, Rachel E.; Xun, Yuhan; Young, Ryan O. and Bowyer, Walter J. (2011). Measurement of Heterogeneous Reaction Rates: Three Strategies for Controlling Mass Transport and Their Application to Indium-Mediated Allylations. The Journal of Physical Chemistry A, 115(40) pp. 11001–11007.

Sivaraj, D.; Bacon, Wendi; Long, G. D.; Rizzieri, D. A.; Horwitz, M. E.; Sullivan, K. M.; Kang, Y.; Li, Z.; Chao, N. J. and Gasparetto, C. (2018). High-dose BCNU/Melphalan conditioning regimen before autologous stem cell transplantation in newly diagnosed multiple myeloma. Bone Marrow Transplantation, 53(1) pp. 34–38.

Tuchman, Sascha A; Bacon, Wendi A; Huang, Li-Wen; Long, Gwynn; Rizzieri, David; Horwitz, Mitchell; Chute, John P.; Sullivan, Keith; Morris Engemann, Ashle; Yopp, Amanda; Li, Zhiguo; Corbet, Kelly; Chao, Nelson and Gasparetto, Cristina (2015). Cyclophosphamide-based hematopoietic stem cell mobilization before autologous stem cell transplantation in newly diagnosed multiple myeloma. Journal of Clinical Apheresis, 30(3) pp. 176–182.

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Van de Sande, Bram; Lee, Joon Sang; Mutasa-Gottgens, Euphemia; Naughton, Bart; Bacon, Wendi; Manning, Jonathan; Wang, Yong; Pollard, Jack; Mendez, Melissa; Hill, Jon; Kumar, Namit; Cao, Xiaohong; Chen, Xiao; Khaladkar, Mugdha; Wen, Ji; Leach, Andrew and Ferran, Edgardo (2023). Applications of single-cell RNA sequencing in drug discovery and development. Nature Reviews Drug Discovery (Early access).

Zhang, Shaoshi; Bacon, Wendi; Peppelenbosch, Maikel P.; van Kemenade, Folkert and Stubbs, Andrew Peter (2022). Deciphering Tumour Microenvironment of Liver Cancer through Deconvolution of Bulk RNA-Seq Data with Single-Cell Atlas. Cancers, 15(1), article no. 153.

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