Multi-photon ionization and fragmentation of uracil: neutral excited-state ring opening and hydration effects

Barc, B.; Ryszka, M.; Spurrell, J.; Dampc, M.; Limão-Vieira, P.; Parajuli, R.; Mason, N. and Eden, S. (2013). Multi-photon ionization and fragmentation of uracil: neutral excited-state ring opening and hydration effects. Journal of Chemical Physics, 139, article no. 244311.

DOI: https://doi.org/10.1063/1.4851476

Abstract

Multi-photon ionization (MPI) of the RNA base uracil has been studied in the wavelength range 220–270 nm, coinciding with excitation to the S₂(ππ*) state. A fragment ion at m/z = 84 was produced by 2-photon absorption at wavelengths ≤232 nm and assigned to C₃H₄N₂O⁺ following CO abstraction. This ion has not been observed in alternative dissociative ionization processes (notably electron impact) and its threshold is close to recent calculations of the minimum activation energy for a ring opening conical intersection to a σ(n-π)π* closed shell state. Moreover, the predicted ring opening transition leaves a CO group at one end of the isomer, apparently vulnerable to abstraction. An MPI mass spectrum of uracil-water clusters is presented for the first time and compared with an equivalent dry measurement. Hydration enhances certain fragment ion pathways (particularly C₃H₃NO⁺) but represses C₃H₄N₂O⁺ production. This indicates that hydrogen bonding to water stabilizes uracil with respect to neutral excited-state ring opening.

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• Item ORO ID
• 39241
• Item Type
• Journal Item
• ISSN
• 1089-7690
• Project Funding Details

• Funded Project Name	Project ID	Funding Body
  Electron attachment to biomolecular clusters	EP/E039618/1	EPSRC (Engineering and Physical Sciences Research Council)
  Irradadiation of biomolecular clusters: model systems for the study of radiation damage in living material	EP/J002577/1	EPSRC (Engineering and Physical Sciences Research Council)
  Absolute clustering effect on electron attachment	EP/L002191/1	EPSRC (Engineering and Physical Sciences Research Council)
  Irradiation of model biomolecular nanosystems	MERG-CT-2007-207292	European Commission

• Academic Unit or School
• Faculty of Science, Technology, Engineering and Mathematics (STEM) > Physical Sciences
  Faculty of Science, Technology, Engineering and Mathematics (STEM)
• Research Group
• Physics
• Copyright Holders
• © 2013 AIP Publishing
• Related URLs
• • http://scitation.aip.org/content/aip/jou...(Other)
• Depositing User
• Sam Eden