Zhou, Deyu; He, Yulan and Kwoh, Chee Keong
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A semantic parser based on the hidden vector state (HVS) model has been proposed for extracting protein-protein interactions. The HVS model is an extension of the basic discrete hidden Markov model, in which context is encoded as a stack-oriented state vector and state transitions are factored into a stack shift operation followed by the push of a new preterminal category label. In this paper, we investigate three different models, log-linear regression (LLR), neural networks (NNs) and support vector machines (SVMs), to rerank parses generated by the HVS model for protein-protein interactions extraction. Features used for reranking are manually deﬁned which include the parse information, the structure information, and the complexity information. The experimental results show that reranking can indeed improve the performance of protein-protein interactions extraction, and reranking based on SVM gives more stable performance than LLR and NN.
|Item Type:||Conference Item|
|Copyright Holders:||The Authors|
|Academic Unit/Department:||Faculty of Science, Technology, Engineering and Mathematics (STEM) > Knowledge Media Institute (KMi)
Faculty of Science, Technology, Engineering and Mathematics (STEM)
|Interdisciplinary Research Centre:||Centre for Research in Computing (CRC)|
|Depositing User:||Kay Dave|
|Date Deposited:||18 May 2011 15:44|
|Last Modified:||08 Aug 2016 18:08|
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